Atoms are made up of a nucleus
(protons and neutrons - positive charge)
surrounded by a number of electrons (negative
charge)
Molecules are made up of at least
two atoms that can either be the same (e.g.
Oxygen molecule, O2 or Hydrogen
molecule, H2) or different (e.g. Water
molecule, H20).
In certain molecules where the
atoms are held together through co-valent bonds,
electrons can be pulled more toward one side than
the other. The end of the molecule toward which
the electrons are pulled becomes more negative
when compared with the other. Such molecule is
said to be POLAR.
In the case of ionic bonds, the atoms that make
up the compound dissociate into charged ions when
dissolved in water
Typically these ions are hydrated i.e. each ion
is surrounded by a number of water molecules
producing what are called as hydrogen
spheres.
As hydrogen has a weak positive charge, it has a
weak attraction for a second electronegative atom
(in the case of water, oxygen). This weak
attraction is called a hydrogen bond.
This weak attraction is largely responsible for
the folding and bending of long organic chains
(e.g. DNA and proteins).